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Functions7,906 in github.com/Project-MONAI/MONAI

Method__call__
This transform can support to normalize ND spatial (channel-first) data. It also supports pseudo ND spatial data (e.g., (C,H,W) is a
monai/apps/reconstruction/transforms/dictionary.py:323
Method__call__
This is an extra instance to allow for defining new mask generators. For creating other mask transforms, define a new class and simpl
monai/apps/reconstruction/transforms/array.py:75
Method__call__
Args: kspace: The input k-space data. The shape is (...,num_coils,H,W,2) for complex 2D inputs and (...,num_coils
monai/apps/reconstruction/transforms/array.py:139
Method__call__
Args: kspace: The input k-space data. The shape is (...,num_coils,H,W,2) for complex 2D inputs and (...,num_coils
monai/apps/reconstruction/transforms/array.py:227
Method__call__
(self, data)
monai/apps/nuclick/transforms.py:65
Method__call__
(self, data)
monai/apps/nuclick/transforms.py:101
Method__call__
(self, data)
monai/apps/nuclick/transforms.py:161
Method__call__
(self, data)
monai/apps/nuclick/transforms.py:214
Method__call__
(self, data)
monai/apps/nuclick/transforms.py:312
Method__call__
(self, data)
monai/apps/nuclick/transforms.py:426
Method__call__
(self, data)
monai/apps/nuclick/transforms.py:562
Method__call__
(self, data)
monai/apps/nuclick/transforms.py:609
Method__call__
(self, data)
monai/apps/nuclick/transforms.py:635
Method__call__
(self, data)
monai/apps/vista3d/transforms.py:91
Method__call__
data["label_prompt"] should not contain 0
monai/apps/vista3d/transforms.py:142
Method__call__
(self, data)
monai/apps/vista3d/transforms.py:216
Method__call__
(self, data: Any)
monai/apps/deepgrow/transforms.py:57
Method__call__
(self, data)
monai/apps/deepgrow/transforms.py:152
Method__call__
(self, data)
monai/apps/deepgrow/transforms.py:222
Method__call__
(self, data)
monai/apps/deepgrow/transforms.py:260
Method__call__
(self, data)
monai/apps/deepgrow/transforms.py:339
Method__call__
(self, data)
monai/apps/deepgrow/transforms.py:433
Method__call__
(self, data)
monai/apps/deepgrow/transforms.py:547
Method__call__
(self, data: Any)
monai/apps/deepgrow/transforms.py:655
Method__call__
(self, data: Any)
monai/apps/deepgrow/transforms.py:742
Method__call__
(self, data: Any)
monai/apps/deepgrow/transforms.py:853
Method__call__
(self, data)
monai/apps/deepgrow/transforms.py:964
Method__call__
(self, engine: SupervisedTrainer | SupervisedEvaluator, batchdata: dict[str, torch.Tensor])
monai/apps/deepgrow/interaction.py:57
Method__call__
Select positives and hard negatives from list samples per image. Hard negative sampler will be applied to each image independently.
monai/apps/detection/utils/hard_negative_sampler.py:129
Method__call__
Compute matches for a single image Args: boxes: bounding boxes, Nx4 or Nx6 torch tensor or ndarray. The box mode is assu
monai/apps/detection/utils/ATSS_matcher.py:107
Method__call__
Compute metric. See :func:`compute` for more information. Args: *args: positional arguments passed to :func:`compute`
monai/apps/detection/metrics/coco.py:160
Method__call__
(self, data: Mapping[Hashable, NdarrayOrTensor])
monai/apps/detection/transforms/dictionary.py:132
Method__call__
(self, data: Mapping[Hashable, NdarrayOrTensor])
monai/apps/detection/transforms/dictionary.py:180
Method__call__
(self, data: Mapping[Hashable, NdarrayOrTensor])
monai/apps/detection/transforms/dictionary.py:235
Method__call__
(self, data: Mapping[Hashable, NdarrayOrTensor])
monai/apps/detection/transforms/dictionary.py:324
Method__call__
(self, data: Mapping[Hashable, NdarrayOrTensor])
monai/apps/detection/transforms/dictionary.py:381
Method__call__
(self, data: Mapping[Hashable, torch.Tensor])
monai/apps/detection/transforms/dictionary.py:448
Method__call__
(self, data: Mapping[Hashable, torch.Tensor])
monai/apps/detection/transforms/dictionary.py:569
Method__call__
(self, data: Mapping[Hashable, torch.Tensor])
monai/apps/detection/transforms/dictionary.py:668
Method__call__
(self, data: Mapping[Hashable, torch.Tensor])
monai/apps/detection/transforms/dictionary.py:737
Method__call__
(self, data: Mapping[Hashable, NdarrayOrTensor])
monai/apps/detection/transforms/dictionary.py:828
Method__call__
(self, data: Mapping[Hashable, NdarrayOrTensor])
monai/apps/detection/transforms/dictionary.py:916
Method__call__
(self, data: Mapping[Hashable, NdarrayOrTensor])
monai/apps/detection/transforms/dictionary.py:998
Method__call__
(self, data: Mapping[Hashable, torch.Tensor])
monai/apps/detection/transforms/dictionary.py:1177
Method__call__
(self, data: Mapping[Hashable, torch.Tensor])
monai/apps/detection/transforms/dictionary.py:1252
Method__call__
(self, data: Mapping[Hashable, torch.Tensor])
monai/apps/detection/transforms/dictionary.py:1328
Method__call__
Args: boxes: source bounding boxes, Nx4 or Nx6 or 0xM torch tensor or ndarray.
monai/apps/detection/transforms/array.py:79
Method__call__
Converts the boxes in src_mode to the dst_mode. Args: boxes: source bounding boxes, Nx4 or Nx6 torch tensor or ndarray.
monai/apps/detection/transforms/array.py:143
Method__call__
Convert given boxes to standard mode. Standard mode is "xyxy" or "xyzxyz", representing box format of [xmin, ymin, xmax, ymax
monai/apps/detection/transforms/array.py:180
Method__call__
Args: boxes: source bounding boxes, Nx4 or Nx6 torch tensor or ndarray. The box mode is assumed to be ``StandardMode``
monai/apps/detection/transforms/array.py:202
Method__call__
Args: boxes: source bounding boxes, Nx4 or Nx6 torch tensor or ndarray. The box mode is assumed to be ``StandardMode``
monai/apps/detection/transforms/array.py:234
Method__call__
Args: boxes: source bounding boxes, Nx4 or Nx6 torch tensor or ndarray. The box mode is assumed to be ``StandardMode``
monai/apps/detection/transforms/array.py:293
Method__call__
Args: boxes: bounding boxes, Nx4 or Nx6 torch tensor or ndarray. The box mode is assumed to be ``StandardMode`` spati
monai/apps/detection/transforms/array.py:341
Method__call__
Args: boxes: bounding boxes, Nx4 or Nx6 torch tensor or ndarray. The box mode is assumed to be ``StandardMode`` label
monai/apps/detection/transforms/array.py:365
Method__call__
Args: boxes: bounding boxes, Nx4 or Nx6 torch tensor or ndarray. The box mode is assumed to be ``StandardMode``. labe
monai/apps/detection/transforms/array.py:420
Method__call__
Args: boxes_mask: int16 array, sized (num_box, H, W). Each channel represents a box. The foreground region in cha
monai/apps/detection/transforms/array.py:461
Method__call__
Args: boxes: bounding boxes, Nx4 or Nx6 torch tensor or ndarray. The box mode is assumed to be ``StandardMode`` label
monai/apps/detection/transforms/array.py:515
Method__call__
Args: img: channel first array, must have shape: (num_channels, H[, W, ..., ]),
monai/apps/detection/transforms/array.py:560
Method__call__
(self, data: Mapping[Hashable, np.ndarray])
monai/apps/deepedit/transforms.py:73
Method__call__
(self, data: Mapping[Hashable, np.ndarray])
monai/apps/deepedit/transforms.py:129
Method__call__
(self, data: Mapping[Hashable, np.ndarray])
monai/apps/deepedit/transforms.py:200
Method__call__
(self, data: Mapping[Hashable, np.ndarray])
monai/apps/deepedit/transforms.py:287
Method__call__
(self, data: Mapping[Hashable, np.ndarray])
monai/apps/deepedit/transforms.py:331
Method__call__
(self, data: Mapping[Hashable, np.ndarray])
monai/apps/deepedit/transforms.py:439
Method__call__
(self, data: Mapping[Hashable, np.ndarray])
monai/apps/deepedit/transforms.py:497
Method__call__
(self, data: Mapping[Hashable, np.ndarray])
monai/apps/deepedit/transforms.py:620
Method__call__
(self, data)
monai/apps/deepedit/transforms.py:708
Method__call__
(self, data)
monai/apps/deepedit/transforms.py:751
Method__call__
(self, data: Mapping[Hashable, np.ndarray])
monai/apps/deepedit/transforms.py:789
Method__call__
(self, data: Mapping[Hashable, np.ndarray])
monai/apps/deepedit/transforms.py:890
Method__call__
(self, data: Mapping[Hashable, np.ndarray])
monai/apps/deepedit/transforms.py:941
Method__call__
(self, engine: SupervisedTrainer | SupervisedEvaluator, batchdata: dict[str, torch.Tensor])
monai/apps/deepedit/interaction.py:61
Method__call__
(self, data: Mapping[Hashable, torch.Tensor])
monai/apps/auto3dseg/transforms.py:59
Method__call__
Callable that Optuna will use to optimize the hyper-parameters Args: obj_filename: the serialized Algo object.
monai/apps/auto3dseg/hpo_gen.py:325
Method__call__
Use the ensembled model to predict result. Args: pred_param: prediction parameter dictionary. The key has two groups: th
monai/apps/auto3dseg/ensemble_builder.py:154
Method__call__
probs_map: the input probabilities map, it must have shape (H[, W, ...]). resolution_level: the level at which the probabilities map
monai/apps/pathology/utils.py:67
Method__call__
(self, data: Mapping[Hashable, np.ndarray])
monai/apps/pathology/transforms/stain/dictionary.py:59
Method__call__
(self, data: Mapping[Hashable, np.ndarray])
monai/apps/pathology/transforms/stain/dictionary.py:105
Method__call__
Perform stain extraction. Args: image: uint8 RGB image to extract stain from return: target_he: H&E absorban
monai/apps/pathology/transforms/stain/array.py:100
Method__call__
Perform stain normalization. Args: image: uint8 RGB image/patch to be stain normalized, pixel values between 0 and 255 R
monai/apps/pathology/transforms/stain/array.py:157
Method__call__
(self, data: Mapping[Hashable, NdarrayOrTensor])
monai/apps/pathology/transforms/post/dictionary.py:116
Method__call__
(self, data: Mapping[Hashable, NdarrayOrTensor])
monai/apps/pathology/transforms/post/dictionary.py:161
Method__call__
(self, data: Mapping[Hashable, NdarrayOrTensor])
monai/apps/pathology/transforms/post/dictionary.py:204
Method__call__
(self, data: Mapping[Hashable, NdarrayOrTensor])
monai/apps/pathology/transforms/post/dictionary.py:240
Method__call__
(self, data: Mapping[Hashable, NdarrayOrTensor])
monai/apps/pathology/transforms/post/dictionary.py:289
Method__call__
(self, data)
monai/apps/pathology/transforms/post/dictionary.py:317
Method__call__
(self, data)
monai/apps/pathology/transforms/post/dictionary.py:360
Method__call__
(self, data)
monai/apps/pathology/transforms/post/dictionary.py:402
Method__call__
(self, data)
monai/apps/pathology/transforms/post/dictionary.py:448
Method__call__
(self, data)
monai/apps/pathology/transforms/post/dictionary.py:533
Method__call__
(self, data)
monai/apps/pathology/transforms/post/dictionary.py:584
Method__call__
Args: image: image where the lowest value points are labeled first. Shape must be [1, H, W, [D]]. mask: optional, the
monai/apps/pathology/transforms/post/array.py:77
Method__call__
Args: prob_map: probability map of segmentation, shape must be [C, H, W, [D]]
monai/apps/pathology/transforms/post/array.py:151
Method__call__
Args: mask: binary segmentation map, the output of :py:class:`GenerateWatershedMask`. Shape must be [1, H, W] or
monai/apps/pathology/transforms/post/array.py:193
Method__call__
Args: mask: binary segmentation map, the output of :py:class:`GenerateWatershedMask`. Shape must be [1, H, W] or
monai/apps/pathology/transforms/post/array.py:259
Method__call__
Args: mask: binary segmentation map, the output of :py:class:`GenerateWatershedMask`. Shape must be [1, H, W] or
monai/apps/pathology/transforms/post/array.py:321
Method__call__
Args: contours: list of (n, 2)-ndarrays, scipy-style clockwise line segments, with lines separating foreground/background.
monai/apps/pathology/transforms/post/array.py:426
Method__call__
Args: inst_mask: segmentation mask for a single instance. Shape should be [1, H, W, [D]] offset: optional offset of s
monai/apps/pathology/transforms/post/array.py:555
Method__call__
Args: inst_mask: segmentation mask for a single instance. Shape should be [1, H, W, [D]] offset: optional offset of s
monai/apps/pathology/transforms/post/array.py:597
Method__call__
Args: type_pred: pixel-level type prediction map after activation function. seg_pred: pixel-level segmentation predic
monai/apps/pathology/transforms/post/array.py:623
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