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Method __init__

monai/transforms/post/array.py:293–325  ·  view source on GitHub ↗

Args: applied_labels: Labels for applying the connected component analysis on. If given, voxels whose value is in this list will be analyzed. If `None`, all non-zero values will be analyzed. is_onehot: if `True`, treat the input data a

(
        self,
        applied_labels: Sequence[int] | int | None = None,
        is_onehot: bool | None = None,
        independent: bool = True,
        connectivity: int | None = None,
        num_components: int = 1,
    )

Source from the content-addressed store, hash-verified

291 backend = [TransformBackends.NUMPY, TransformBackends.CUPY]
292
293 def __init__(
294 self,
295 applied_labels: Sequence[int] | int | None = None,
296 is_onehot: bool | None = None,
297 independent: bool = True,
298 connectivity: int | None = None,
299 num_components: int = 1,
300 ) -> None:
301 """
302 Args:
303 applied_labels: Labels for applying the connected component analysis on.
304 If given, voxels whose value is in this list will be analyzed.
305 If `None`, all non-zero values will be analyzed.
306 is_onehot: if `True`, treat the input data as OneHot format data, otherwise, not OneHot format data.
307 default to None, which treats multi-channel data as OneHot and single channel data as not OneHot.
308 independent: whether to treat ``applied_labels`` as a union of foreground labels.
309 If ``True``, the connected component analysis will be performed on each foreground label independently
310 and return the intersection of the largest components.
311 If ``False``, the analysis will be performed on the union of foreground labels.
312 default is `True`.
313 connectivity: Maximum number of orthogonal hops to consider a pixel/voxel as a neighbor.
314 Accepted values are ranging from 1 to input.ndim. If ``None``, a full
315 connectivity of ``input.ndim`` is used. for more details:
316 https://scikit-image.org/docs/dev/api/skimage.measure.html#skimage.measure.label.
317 num_components: The number of largest components to preserve.
318
319 """
320 super().__init__()
321 self.applied_labels = ensure_tuple(applied_labels) if applied_labels is not None else None
322 self.is_onehot = is_onehot
323 self.independent = independent
324 self.connectivity = connectivity
325 self.num_components = num_components
326
327 def __call__(self, img: NdarrayOrTensor) -> NdarrayOrTensor:
328 """

Callers

nothing calls this directly

Calls 2

ensure_tupleFunction · 0.90
__init__Method · 0.45

Tested by

no test coverage detected