Args: data_array: in shape (num_channels, H[, W, ...]). mode: {``"bilinear"``, ``"nearest"``} or spline interpolation order 0-5 (integers). Interpolation mode to calculate output values. Defaults to ``"self.mode"``. See also: https://p
(
self,
data_array: torch.Tensor,
mode: str | int | None = None,
padding_mode: str | None = None,
align_corners: bool | None = None,
dtype: DtypeLike = None,
scale_extent: bool | None = None,
output_spatial_shape: Sequence[int] | np.ndarray | int | None = None,
lazy: bool | None = None,
)
| 438 | self.sp_resample.lazy = val |
| 439 | |
| 440 | def __call__( |
| 441 | self, |
| 442 | data_array: torch.Tensor, |
| 443 | mode: str | int | None = None, |
| 444 | padding_mode: str | None = None, |
| 445 | align_corners: bool | None = None, |
| 446 | dtype: DtypeLike = None, |
| 447 | scale_extent: bool | None = None, |
| 448 | output_spatial_shape: Sequence[int] | np.ndarray | int | None = None, |
| 449 | lazy: bool | None = None, |
| 450 | ) -> torch.Tensor: |
| 451 | """ |
| 452 | Args: |
| 453 | data_array: in shape (num_channels, H[, W, ...]). |
| 454 | mode: {``"bilinear"``, ``"nearest"``} or spline interpolation order 0-5 (integers). |
| 455 | Interpolation mode to calculate output values. Defaults to ``"self.mode"``. |
| 456 | See also: https://pytorch.org/docs/stable/generated/torch.nn.functional.grid_sample.html |
| 457 | When it's an integer, the numpy (cpu tensor)/cupy (cuda tensor) backends will be used |
| 458 | and the value represents the order of the spline interpolation. |
| 459 | See also: https://docs.scipy.org/doc/scipy/reference/generated/scipy.ndimage.map_coordinates.html |
| 460 | padding_mode: {``"zeros"``, ``"border"``, ``"reflection"``} |
| 461 | Padding mode for outside grid values. Defaults to ``"self.padding_mode"``. |
| 462 | See also: https://pytorch.org/docs/stable/generated/torch.nn.functional.grid_sample.html |
| 463 | When `mode` is an integer, using numpy/cupy backends, this argument accepts |
| 464 | {'reflect', 'grid-mirror', 'constant', 'grid-constant', 'nearest', 'mirror', 'grid-wrap', 'wrap'}. |
| 465 | See also: https://docs.scipy.org/doc/scipy/reference/generated/scipy.ndimage.map_coordinates.html |
| 466 | align_corners: Geometrically, we consider the pixels of the input as squares rather than points. |
| 467 | See also: https://pytorch.org/docs/stable/generated/torch.nn.functional.grid_sample.html |
| 468 | Defaults to ``None``, effectively using the value of `self.align_corners`. |
| 469 | dtype: data type for resampling computation. Defaults to ``self.dtype``. |
| 470 | If None, use the data type of input data. To be compatible with other modules, |
| 471 | the output data type is always ``float32``. |
| 472 | scale_extent: whether the scale is computed based on the spacing or the full extent of voxels, |
| 473 | The option is ignored if output spatial size is specified when calling this transform. |
| 474 | See also: :py:func:`monai.data.utils.compute_shape_offset`. When this is True, `align_corners` |
| 475 | should be `True` because `compute_shape_offset` already provides the corner alignment shift/scaling. |
| 476 | output_spatial_shape: specify the shape of the output data_array. This is typically useful for |
| 477 | the inverse of `Spacingd` where sometimes we could not compute the exact shape due to the quantization |
| 478 | error with the affine. |
| 479 | lazy: a flag to indicate whether this transform should execute lazily or not |
| 480 | during this call. Setting this to False or True overrides the ``lazy`` flag set |
| 481 | during initialization for this call. Defaults to None. |
| 482 | |
| 483 | Raises: |
| 484 | ValueError: When ``data_array`` has no spatial dimensions. |
| 485 | ValueError: When ``pixdim`` is nonpositive. |
| 486 | |
| 487 | Returns: |
| 488 | data tensor or MetaTensor (resampled into `self.pixdim`). |
| 489 | |
| 490 | """ |
| 491 | original_spatial_shape = ( |
| 492 | data_array.peek_pending_shape() if isinstance(data_array, MetaTensor) else data_array.shape[1:] |
| 493 | ) |
| 494 | sr = len(original_spatial_shape) |
| 495 | if sr <= 0: |
| 496 | raise ValueError(f"data_array must have at least one spatial dimension, got {original_spatial_shape}.") |
| 497 | affine_: np.ndarray |
nothing calls this directly
no test coverage detected