Functions — github.com/astroautomata/PySR

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Functions356 in github.com/astroautomata/PySR

⨍ Functions 356◇ Types & classes 31

↓ 1 callersFunctioncreate_or_update_file

Create or update a file in repo on branch. Returns the commit SHA created by the contents API.

scripts/paper_image_sync.py:254

↓ 1 callersFunctioncreate_sympy_symbols

( feature_names_in: ArrayLike[str], )

pysr/export_sympy.py:83

↓ 1 callersFunctioncreate_sympy_symbols_map

( feature_names_in: ArrayLike[str], )

pysr/export_sympy.py:77

↓ 1 callersFunctionensure_branch

Ensure branch exists in repo, creating from base_branch if missing.

scripts/paper_image_sync.py:296

↓ 1 callersFunctiongenerate_table_environment

( columns: list[str] = ["equation", "complexity", "loss"] )

pysr/export_latex.py:30

↓ 1 callersFunctionget_object_from_path

Import and return the Python object at the given path.

docs/gen_api.py:33

↓ 1 callersMethodget_pkl_filename

(self)

pysr/sr.py:1484

↓ 1 callersFunctionget_pr_info

(repo: str, pr_number: int, token: str)

scripts/paper_image_sync.py:61

↓ 1 callersFunctioninit_julia

(*args, **kwargs)

pysr/deprecated.py:17

↓ 1 callersFunctioninstall

(*args, **kwargs)

pysr/deprecated.py:8

↓ 1 callersFunctionisinstalled

(uuid_s: str)

pysr/julia_extensions.py:51

↓ 1 callersFunctionjl_dict

(x)

pysr/julia_helpers.py:46

↓ 1 callersFunctionjl_named_tuple

(d)

pysr/julia_helpers.py:50

↓ 1 callersMethodjulia_expression_options

(self)

pysr/expression_specs.py:284

↓ 1 callersMethodjulia_expression_spec

(self)

pysr/expression_specs.py:90

↓ 1 callersFunctionlist_pr_files

(repo: str, pr_number: int, token: str)

scripts/paper_image_sync.py:78

↓ 1 callersFunctionload_all_packages

Install and load all Julia extensions available to PySR.

pysr/julia_extensions.py:36

↓ 1 callersFunctionmain

()

scripts/paper_image_sync.py:438

↓ 1 callersFunctionmain

()

scripts/validate_papers_yml.py:38

↓ 1 callersFunctionmain

Main entry point.

docs/gen_api.py:373

↓ 1 callersFunctionmain

Generate index.md from _index.md template and README.md content.

docs/gen_vitepress_index.py:63

↓ 1 callersFunctionmerge_trials

Merge two hyperopt trials objects :trials1: The primary trials object :trials2_slice: A slice of the trials object to be merged, obta

benchmarks/print_best_model.py:18

↓ 1 callersFunctionmulti_denoise

Perform `denoise` along each column of `y` independently.

pysr/denoising.py:33

↓ 1 callersFunctionopen_pr

Open a PR. If one already exists for (head->base), return its URL.

scripts/paper_image_sync.py:326

↓ 1 callersFunctionpr_has_existing_bot_comment

Return True if the paper-image bot has already commented on this PR. This is used to avoid posting a confusing warning when a user has already

scripts/paper_image_sync.py:96

↓ 1 callersFunctionprocess_markdown_file

Process a markdown file, replacing ::: directives with rendered docs.

docs/gen_api.py:326

↓ 1 callersFunctionprocess_readme_content

Extract main content from README.md for VitePress. Skips GitHub-specific elements (logo, title) and starts from first ## heading.

docs/gen_vitepress_index.py:9

↓ 1 callersFunctionprocess_readme_to_index

Convert README.md to index.md with VitePress syntax.

docs/gen_api.py:348

↓ 1 callersFunctionrender_api_doc

Render API documentation for a Python object.

docs/gen_api.py:188

↓ 1 callersFunctionresize_compress_image

Return (processed_bytes, output_ext). Policy: - Always output PNG (lossless) and strip alpha. - Any transparency is flattened onto a whit

scripts/paper_image_sync.py:141

↓ 1 callersFunctionruntests

Run all tests in cliTest.py.

pysr/test/test_cli.py:66

↓ 1 callersFunctionstr_param_groups

(param_groupings, params, cur_heading=2)

docs/gen_param_docs.py:23

↓ 1 callersFunctionsympy2jaxtext

(expr, parameters, symbols_in, extra_jax_mappings=None)

pysr/export_jax.py:58

↓ 1 callersFunctionsympy2multilatextable

Generate multiple latex tables for a list of equation sets.

pysr/export_latex.py:130

↓ 1 callersFunctionsympy2numpy

(eqn, sympy_symbols, *, selection=None)

pysr/export_numpy.py:13

↓ 1 callersFunctiontry_push_cleanup_commit

If PR is from same repo, push a cleanup commit to the PR branch. Returns commit SHA if pushed, else None.

scripts/paper_image_sync.py:383

↓ 1 callersFunctionwith_preamble

(table_string: str)

pysr/export_latex.py:158

↓ 1 callersMethodwrite_hparams

Write hyperparameters to the logger.

pysr/logger_specs.py:20

Method__call__

(self, X)

pysr/export_numpy.py:32

Method__call__

(self, X: np.ndarray, *args)

pysr/expression_specs.py:404

Method__getstate__

Handle pickle serialization for PySRRegressor. The Scikit-learn standard requires estimators to be serializable via `pickle.

pysr/sr.py:1415

Method__init__

( self, model_selection: Literal["best", "accuracy", "score"] = "best", *, bin

pysr/sr.py:948

Method__init__

( self, expression, symbols_in, selection=None, extra_funcs=None, **kwargs )

pysr/export_torch.py:161

Method__init__

(self, eqn, sympy_symbols, selection=None)

pysr/export_numpy.py:24

Method__init__

(self, settings=None, prec=3)

pysr/export_latex.py:13

Method__init__

( self, function_symbols: list[str], combine: str, num_features: dict[str, int

pysr/expression_specs.py:183

Method__init__

(self, max_parameters: int)

pysr/expression_specs.py:377

Method__init__

(self, expression)

pysr/expression_specs.py:401

Method__repr__

(self)

pysr/export_torch.py:178

Method__repr__

(self)

pysr/export_numpy.py:29

Function_add_package

()

pysr/julia_extensions.py:58

Function_ensure_no_complex_data

(*args, **kwargs)

pysr/sklearn_monkeypatch.py:6

Function_import_juliacall

()

pysr/julia_import.py:48

Function_install

(julia_project, quiet, precompile)

pysr/_cli/main.py:47

Method_print_Float

(self, expr)

pysr/export_latex.py:17

Function_tests

Run parts of the PySR test suite. Choose from main, jax, torch, autodiff, cli, dev, startup, and slurm. You can give multiple tests, separate

pysr/_cli/main.py:65

Functionbest

(*args, **kwargs)

pysr/deprecated.py:41

Functionbest_callable

(*args, **kwargs)

pysr/deprecated.py:72

Functionbest_row

(*args, **kwargs)

pysr/deprecated.py:51

Functionbest_tex

(*args, **kwargs)

pysr/deprecated.py:62

Methodclose

(self, logger: AnyValue)

pysr/logger_specs.py:83

Methodcos_approx

(x)

pysr/test/test_jax.py:124

Methodcos_approx

(x)

pysr/test/test_torch.py:225

Methodcreate_exports

Create additional columns in the equations dataframe.

pysr/expression_specs.py:56

Methodcreate_exports

( self, model: PySRRegressor, equations: pd.DataFrame, search_output,

pysr/expression_specs.py:308

Methodcreate_exports

( self, model: PySRRegressor, equations: pd.DataFrame, search_output,

pysr/expression_specs.py:389

Methodcreate_logger

(self)

pysr/logger_specs.py:49

Methodevaluates_in_julia

(self)

pysr/expression_specs.py:67

Methodevaluates_in_julia

(self)

pysr/expression_specs.py:305

Methodevaluates_in_julia

(self)

pysr/expression_specs.py:386

Methodexpression_spec_

(self)

pysr/sr.py:1522

Methodfailing_operation

()

pysr/test/test_startup.py:169

Functionfn_

(*args)

pysr/export_torch.py:12

Methodforward

(self, memodict)

pysr/export_torch.py:147

Methodforward

(self, X)

pysr/export_torch.py:181

Functionget_runtests

()

pysr/test/test_cli.py:7

Methodjulia_expression_spec

The expression specification

pysr/expression_specs.py:51

Methodjulia_expression_spec

(self)

pysr/expression_specs.py:254

Methodjulia_expression_spec

(self)

pysr/expression_specs.py:380

Methodjulia_options_

The deserialized julia options.

pysr/sr.py:1499

Methodjulia_state_

The deserialized state.

pysr/sr.py:1504

Functionprocess_directive

Process a single ::: directive.

docs/gen_api.py:264

Functionpysr

(X, y, weights=None, **kwargs)

pysr/deprecated.py:27

Functionpysr

(context)

pysr/_cli/main.py:22

Methodraw_julia_state_

(self)

pysr/sr.py:1512

Functionreplace_details

(match)

docs/gen_api.py:358

Functionrun_trial

Evaluate the model loss using the hyperparams in args :args: A dictionary containing all hyperparameters :returns: Dict with status and loss

benchmarks/hyperparamopt.py:36

Functionruntests

(just_tests=False)

pysr/test/test_slurm.py:281

Functionruntests

(just_tests=False)

pysr/test/test_startup.py:226

Functionruntests

Run all tests in test_jax.py.

pysr/test/test_jax.py:153

Functionruntests

Run all tests in test.py.

pysr/test/test_main.py:2352

Functionruntests

Run all tests in test_autodiff.py.

pysr/test/test_autodiff.py:58

Functionruntests

Run all tests in test_torch.py.

pysr/test/test_torch.py:253

Functionruntests

(just_tests=False)

pysr/test/test_dev.py:51

MethodsetUp

(self)

pysr/test/test_slurm.py:26

MethodsetUp

(self)

pysr/test/test_cli.py:14

MethodsetUp

(self)

pysr/test/test_startup.py:22

MethodsetUp

(self)

pysr/test/test_startup.py:164

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