* Main execution function for the defragmentation process. * * It orchestrates the Backup -> Extract -> Nuke -> Load -> Cleanup pipeline. * * Key

* @summary A lightweight CLI tool to defragment the SQLite Native Vector Database. * This script runs the SQLite VACUUM command to optimize the knowl

* Internal helper method for events which use the delay option * @param {Object} cb * @param {Array} args * @param {Number} delay

* @param {String} slug

* Guarded delete-collection wrapper. Refuses canonical production collection names * (`neo-agent-memory`, `neo-agent-sessions`, `neo-agent-graph`

* @param {Number} id * @returns {Promise<any>}

* @param {Object} data * @param {Array} data.rules * @protected

* @summary Removes the old identity node after all incoming/outgoing edges moved. * @param {Object} db Open better-sqlite3 connection. * @param {Obj

* Delivers the digest to the correct adapter (tmux or osascript).

* @summary Delivers a wake digest via osascript, retrying transient frontmost-loss races. * * macOS focus-stealing prevention makes a background dae

* @summary Posts a wake digest to a wake-dispatchable webhook address. * @param {Object} subscription WAKE_SUBSCRIPTION node. * @param {String} dige

* @param {Object} packageJson Parsed package.json. * @returns {Array<{id: String, script: String, command: String, label: String, frontier: Boolean,

* @summary Formats the timeout value used in OpenAI-compatible embedding timeout errors. * @param {Number} requestTimeoutMs The timeout in millisecon

* @param {Boolean} [silent] true to prevent a vdom update * @param {Object[]|String[]} itemCollection=this.items

* @param {String} rowId * @param {Boolean} [silent] true to prevent a vdom update

*

* Destroy all created child instances * @param {...*} args

*

* @param {Boolean} updateParentVdom=false * @param {Boolean} silent=false

* @param {Boolean} updateParentVdom=false * @param {Boolean} silent=false

*

* Destroys the state provider and cleans up all associated effects.

* @param args

*

* Destroys the functional component * @param {Boolean} [updateParentVdom=false] true to remove the component from the parent vdom => real dom

* @protected

* Override for using custom animations

* @param {Number} [startIndex] * @param {Number} [amountItems]

* Detaches an issue from one or more ProjectV2 boards. * * For each project, resolves projectId + itemId (the project-item ID, distinct from

*

* Heuristic to determine priority from event type if not specified. * @param {String} type * @returns {String}

* This method recursively compares the new VDOM config with the last applied config * for a given component instance and its sub-instances.

* Compares two server ID sets. * @param {Object} options * @param {String[]} options.actual Actual IDs. * @param {String[]} options.expected Expect

* Helper to dispatch a single event to the correct window * @param {Object} data * @param {String} data.id * @param {Object} data.optio

* Dispatches the accumulated events and resets the queue. * @protected

* @param {Object} record * @returns {Promise<void>}

* Returns true in case the dock direction changes from horizontal (left, right) * to vertical (bottom, top) or vice versa. * @param {String}

* Runs Docker Compose against the integration fixture project. * @param {String[]} args Docker Compose arguments after the compose file selector. *

* Runs Docker Compose against the integration fixture project. * @param {String[]} args Docker Compose arguments after the compose file selector. *

* @summary Runs Docker Compose against the integration fixture project. * Runs Docker Compose against the integration fixture project. * @param {Str

* Runs Docker Compose against the integration fixture project. * @param {String[]} args Docker Compose arguments after the compose file selector. *

* Runs Docker Compose against the integration fixture project. * @param {String[]} args Docker Compose arguments after the compose file selector. *

* Runs Docker Compose against the integration fixture project. * @param {String[]} args Docker Compose arguments after the compose file selector. *

* @summary Determines whether a test file is strong enough evidence for a structural node. * * A `VALIDATES` edge is only written when the t

* Returns the first component which matches the config-selector moving down the component items tree. * Use returnFirstMatch=false to get an arra

* Draws an additional highlight for the active navigation item. * **"Energy Surge" Effect:** * Renders a high-intensity pass of the energy s

* Draws the autonomous agents (Seeker Drones). * * **Visuals:** * - **Head:** A solid circle indicating current position. * - **Tr

* Draws a subtle, large-scale background Helix pattern with a 3D Ribbon effect. * * **Intent:** * Provides a structural backbone to the

* Draws the main foreground "Split Stream" energy strands with 3D effects. * * **3D Architecture:** * 1. **Ribbon Fill:** Draws a low-o

* Draws the main Application Lattice (Foreground). * Handles 3 batches: * 1. **Idle Hexes:** Faint outlines. * 2. **Super Hexes:** Larg

* Draws an additional highlight for the hovered navigation item. * **"Preview" Effect:** * Renders a static intensity pass of the energy str

* Draws the Kernel Layer (Background). * This layer moves slowly (Parallax) to create depth. * @param {CanvasRenderingContext2D} ctx *

* Draws the neural network (nodes and connections). * * **Intent:** * Visualizes the "Application Graph". * - **Parallax:** Applie

* Draws the data packets traveling along connections. * Packets represent signal flow between nodes. * @param {OffscreenCanvasRenderingConte

* Draws construction particles. * @param {CanvasRenderingContext2D} ctx

* Draws the "Ether" particle field to add volumetric depth and interactivity. * * **Intent:** * Creates a living, breathing atmosphere

* Draws Data Runners (High-speed Packets). * Visualized as a gradient line (Trail) leading to a white head. * Uses optimized projection re-u

* Draws expanding shockwaves from clicks with Chromatic Aberration and Composite Rings. * Uses optimized RGBA composition to reduce GC pressure.

* Draws expanding shockwaves from clicks. * @param {CanvasRenderingContext2D} ctx * @param {Number} width

* Draws temporary spark particles (Data Debris). * @param {OffscreenCanvasRenderingContext2D} ctx

* Draws the Data Strata (Mid-ground floating clusters). * These elements sit between the background and the main lattice. * @param {CanvasRe

* @param {Object} proxyRect

* @summary Groups parsed chunks by repoSlug and routes each group to VectorService.embed(). * @param {Object} options * @param {Boolean} [o

* Emits an optional peer-visible handoff and returns its stable identifier. * @param {Object} outcome * @returns {Promise<String|null>}

* @param {Boolean} enable

* Resumes the collection events. * If you started an update using the startSilentUpdateMode flag, * you must use the endSilentUpdateMode par

* Enforces the one-instance-per-data-dir singleton contract: takes over from a live prior * instance (SIGTERM → 3s grace → SIGKILL), ignores recycled

* Ensures stub nodes exist for every edge target before the edge itself is inserted. The * SQLite schema enforces a FOREIGN KEY from `edges.targe

* Checks if data files exist and creates them with defaults if missing. * @returns {Promise<void>}

* @summary Lazy-aware record resolution for deep-links. * * Probes the store for `itemId`; if absent (its chunk is not loaded yet), expands

* @param {String} itemId * @returns {Promise<Object|null>}

* @param {String} itemId * @returns {Promise<Object|null>}

* @summary Inserts or updates the target AgentIdentity node before edge rewrites. * @param {Object} db Open better-sqlite3 connection. * @param {Obj

* @summary Escapes values interpolated into AppleScript string literals. * @param {String} value * @returns {String}

* @summary Escapes a string for safe literal use inside a regular expression. * @param {String} value String to escape. * @returns {String} * @priv

* Evaluates a GraphLog entry against a WAKE_SUBSCRIPTION trigger + filters by delegating to the * shared, GraphService-free `match()` evaluator — the

* Checks if rect1 does not have an intersection with rect2 * !includes() is true for intersections as well * @param {Object} rect1 * @p

* @param {Object} data * @param {String} data.command * @returns {Object} data

* Runs an ES module snippet inside the deployed Knowledge Base container. * @param {String} code The JavaScript source to execute. * @param {Object}

* Executes the orchestration pipeline. * @param {Object} [options] * @param {Boolean} [options.dryRun=false] Logs directives without agent e

* Executes the provided Neo.mjs source code within the given container. * * This method performs a complex transformation to emulate a nativ

* Retrieves and executes the registered Pre-Update callback for a component. * This is called by VdomLifecycle just before checking `needsVdomUpd

* Executes tools requested by the LLM. * @param {Object[]} toolCalls List of tool calls from the provider. * @returns {Promise<Object[]>} Re

* Executes a combined difflog batch inside an atomic array natively safely. * @param {Object[]} diffLog Array of mutation traces

* Internal method to send update requests to the vdom worker. * * **Teleportation / Batched Disjoint Updates:** * This method implement

* Moves a clone of an item to the top left corner * @param {String} itemId

* Expands an item based on the record * @param {Object} record

* @param {Object[]} records * @param {String} parentId

* @param {Object[]} records * @param {String} parentId

* @summary Exports the Knowledge Base ChromaDB collection as JSONL. * * Peer-symmetric with `Memory_DatabaseService.exportDatabase`. Called