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Types & classes89 in github.com/K-Dense-AI/scientific-agent-skills

⨍ Functions 1,796◇ Types & classes 89
↓ 13 callersClassCheckResult
skills/timesfm-forecasting/scripts/check_system.py:75
↓ 8 callersClassResearchLookup
Research information lookup with intelligent backend routing. Routes queries to the Parallel Chat API (default) or Perplexity sonar-pro-searc
skills/research-lookup/research_lookup.py:24
↓ 7 callersClassStubBackend
skills/autoskill/tests/test_synthesize.py:8
↓ 7 callersClassStubBackend
skills/autoskill/tests/test_run.py:40
↓ 5 callersClassClaudeBackend
skills/autoskill/scripts/backends.py:6
↓ 5 callersClassLocalBackend
skills/autoskill/scripts/backends.py:31
↓ 5 callersClassReport
Collects errors (fatal) and warnings (advisory).
skills/bulk-rnaseq/scripts/validate_samplesheet.py:36
↓ 3 callersClassCustomDataset
Custom Dataset implementation. Replace this with your actual dataset implementation.
skills/pytorch-lightning/scripts/template_datamodule.py:13
↓ 3 callersClassCustomEnv
Custom Gymnasium Environment Template. This is a template for creating custom environments that work with Stable Baselines3. Modify the
skills/stable-baselines3/scripts/custom_env_template.py:17
↓ 3 callersClassSynthesisError
skills/autoskill/scripts/synthesize.py:7
↓ 2 callersClassDOCXSchemaValidator
skills/pptx/scripts/office/validators/docx.py:16
↓ 2 callersClassDOCXSchemaValidator
skills/docx/scripts/office/validators/docx.py:16
↓ 2 callersClassDOCXSchemaValidator
skills/xlsx/scripts/office/validators/docx.py:16
↓ 2 callersClassMEMORYSTATUSEX
skills/timesfm-forecasting/scripts/check_system.py:150
↓ 2 callersClassPPTXSchemaValidator
skills/pptx/scripts/office/validators/pptx.py:10
↓ 2 callersClassPPTXSchemaValidator
skills/docx/scripts/office/validators/pptx.py:10
↓ 2 callersClassPPTXSchemaValidator
skills/xlsx/scripts/office/validators/pptx.py:10
↓ 2 callersClassPresentationValidator
Validates presentations for common issues.
skills/scientific-slides/scripts/validate_presentation.py:34
↓ 2 callersClassPromoteError
skills/autoskill/scripts/promote.py:7
↓ 2 callersClassRectAndField
skills/pdf/scripts/check_bounding_boxes.py:9
↓ 2 callersClassRedliningValidator
skills/pptx/scripts/office/validators/redlining.py:11
↓ 2 callersClassRedliningValidator
skills/docx/scripts/office/validators/redlining.py:11
↓ 2 callersClassRedliningValidator
skills/xlsx/scripts/office/validators/redlining.py:11
↓ 2 callersClassResourceMonitor
Monitor resource usage with detailed statistics tracking. Tracks: - Queue lengths over time - Resource utilization - Wait times
skills/simpy/scripts/resource_monitor.py:15
↓ 2 callersClass_FakeLMStudioHandler
Returns different verdicts based on apps mentioned in the prompt.
skills/autoskill/tests/test_e2e.py:100
↓ 1 callersClassBibTeXFormatter
Format and clean BibTeX entries.
skills/citation-management/scripts/format_bibtex.py:13
↓ 1 callersClassCDSValidator
Validator for clinical decision support documents.
skills/clinical-decision-support/scripts/validate_cds_document.py:22
↓ 1 callersClassCareValidator
Validator for CARE guideline compliance.
skills/clinical-reports/scripts/validate_case_report.py:20
↓ 1 callersClassCitationValidator
Validate BibTeX entries for errors and inconsistencies.
skills/citation-management/scripts/validate_citations.py:15
↓ 1 callersClassCitationVerifier
skills/literature-review/scripts/verify_citations.py:14
↓ 1 callersClassConstrainedProblem
Custom constrained bi-objective problem. Minimize: f1(x) = x1 f2(x) = (1 + x2) / x1 Subject to: x2 + 9*x1 >= 6
skills/pymoo/scripts/custom_problem_example.py:50
↓ 1 callersClassDOIConverter
Convert DOIs to BibTeX entries using CrossRef API.
skills/citation-management/scripts/doi_to_bibtex.py:14
↓ 1 callersClassEntry
skills/hugging-science/scripts/fetch_catalog.py:68
↓ 1 callersClassExtractedDocument
Typed view of a single extracted document for JSON export.
skills/exa-search/scripts/exa_extract.py:38
↓ 1 callersClassGapAnalyzer
Analyzes documentation against ISO 13485 requirements.
skills/iso-13485-certification/scripts/gap_analyzer.py:163
↓ 1 callersClassGoogleScholarSearcher
Search Google Scholar using scholarly library.
skills/citation-management/scripts/search_google_scholar.py:24
↓ 1 callersClassInfographicGenerator
Generate infographics using AI with smart iterative refinement. Uses Gemini 3.1 Pro for quality review to determine if regeneration is needed
skills/infographics/scripts/generate_infographic_ai.py:249
↓ 1 callersClassMetadataExtractor
Extract metadata from various sources and generate BibTeX.
skills/citation-management/scripts/extract_metadata.py:18
↓ 1 callersClassMultiAgentEnvironment
Multi-agent environment template. Example: Cooperative navigation task where agents must reach individual goals.
skills/pufferlib/scripts/env_template.py:165
↓ 1 callersClassMyBiObjectiveProblem
Custom bi-objective optimization problem. Minimize: f1(x) = x1^2 + x2^2 f2(x) = (x1-1)^2 + (x2-1)^2 Subject to:
skills/pymoo/scripts/custom_problem_example.py:15
↓ 1 callersClassMyEnvironment
Custom PufferLib environment template. This is a simple grid world example. Customize it for your specific task.
skills/pufferlib/scripts/env_template.py:14
↓ 1 callersClassPDFToImagesConverter
Converts PDF presentations to images.
skills/scientific-slides/scripts/pdf_to_images.py:25
↓ 1 callersClassPolicy
Example policy network.
skills/pufferlib/scripts/train_template.py:18
↓ 1 callersClassPowerEstimate
skills/statistical-power/scripts/simulate_power.py:27
↓ 1 callersClassPubMedSearcher
Search PubMed using NCBI E-utilities API.
skills/citation-management/scripts/search_pubmed.py:17
↓ 1 callersClassResearchLookup
Research information lookup with intelligent backend routing. Routes queries to the Parallel Chat API (default) or Perplexity sonar-pro-searc
skills/research-lookup/scripts/research_lookup.py:24
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/venue-templates/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/scholar-evaluation/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/scientific-slides/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/scientific-writing/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/hypothesis-generation/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/research-lookup/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/clinical-reports/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/clinical-decision-support/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/latex-posters/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/pptx-posters/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/treatment-plans/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/peer-review/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/markitdown/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/citation-management/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/scientific-schematics/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScientificSchematicGenerator
Generate scientific schematics using AI with smart iterative refinement. Uses Gemini 3.1 Pro Preview for quality review to determine if regen
skills/literature-review/scripts/generate_schematic_ai.py:52
↓ 1 callersClassScreenpipeUnreachable
Raised when the screenpipe daemon cannot be reached. The autoskill skill cannot run without screenpipe. Install it from https://github.com/sc
skills/autoskill/scripts/run.py:13
↓ 1 callersClassSearchResult
Typed view of a single Exa search result for JSON export.
skills/exa-search/scripts/exa_search.py:39
↓ 1 callersClassSimulationConfig
Configuration parameters for the simulation.
skills/simpy/scripts/basic_simulation_template.py:13
↓ 1 callersClassSimulationStats
Collect and report simulation statistics.
skills/simpy/scripts/basic_simulation_template.py:26
↓ 1 callersClassSlideImageGenerator
Generate presentation slides or visuals using AI with iterative refinement. Two modes: - full_slide: Generate complete slide with title,
skills/scientific-slides/scripts/generate_slide_image_ai.py:64
↓ 1 callersClassSystemReport
skills/timesfm-forecasting/scripts/check_system.py:90
↓ 1 callersClassTemplateDataModule
Template LightningDataModule for data handling. This class encapsulates all data processing steps: 1. Download/prepare data (prepare_dat
skills/pytorch-lightning/scripts/template_datamodule.py:62
↓ 1 callersClassTemplateLightningModule
Template LightningModule for building deep learning models. Args: learning_rate: Learning rate for optimizer hidden_dim: Hid
skills/pytorch-lightning/scripts/template_lightning_module.py:16
ClassActionNode
Represents an action/outcome in the clinical algorithm.
skills/clinical-decision-support/scripts/build_decision_tree.py:30
ClassBaseSchemaValidator
skills/pptx/scripts/office/validators/base.py:12
ClassBaseSchemaValidator
skills/docx/scripts/office/validators/base.py:12
ClassBaseSchemaValidator
skills/xlsx/scripts/office/validators/base.py:12
ClassBuildContentsTests
The content-options builder is shared logic across all three scripts.
skills/exa-search/tests/test_exa_search.py:54
ClassContainerMonitor
Monitor Container resources (for tracking level changes).
skills/simpy/scripts/resource_monitor.py:240
ClassDecisionNode
Represents a decision point in the clinical algorithm.
skills/clinical-decision-support/scripts/build_decision_tree.py:16
ClassIntegrationHeaderAndFlowTests
End-to-end: run() sets the integration header and calls the right SDK method.
skills/exa-search/tests/test_exa_search.py:139
ClassMultiResourceMonitor
Monitor multiple resources simultaneously.
skills/simpy/scripts/resource_monitor.py:194
ClassResultTypingTests
Verify the Any → typed-dataclass conversion handles missing fields.
skills/exa-search/tests/test_exa_search.py:103
ClassRunPacsomaticUnitTests
skills/pacsomatic/tests/test_run_pacsomatic.py:20
ClassSplitCsvTests
skills/exa-search/tests/test_exa_search.py:83
ClassTestExampleScripts
Tests that example scripts exist and are valid Python.
skills/open-notebook/scripts/test_open_notebook_skill.py:312
ClassTestPyprojectToml
Tests that pyproject.toml exists and has valid project metadata.
skills/open-notebook/scripts/test_open_notebook_skill.py:347
ClassTestReferenceFiles
Tests that reference documentation files exist and have sufficient content.
skills/open-notebook/scripts/test_open_notebook_skill.py:244
ClassTestSkillDirectoryStructure
Tests that the skill directory has the required structure.
skills/open-notebook/scripts/test_open_notebook_skill.py:26
ClassTestSkillMdApiEndpointCoverage
Tests that SKILL.md or reference docs cover key API endpoint categories.
skills/open-notebook/scripts/test_open_notebook_skill.py:364
ClassTestSkillMdContent
Tests that SKILL.md has required content sections.
skills/open-notebook/scripts/test_open_notebook_skill.py:111
ClassTestSkillMdFrontmatter
Tests that SKILL.md has correct YAML frontmatter.
skills/open-notebook/scripts/test_open_notebook_skill.py:58